Publications

Stephanie M. Rosales, Lindsay K. Huebner, James S. Evans, Amy Apprill, Andrew C. Baker, Cynthia C. Becker, Anthony J. Bellantuono, Marilyn E. Brandt, Abigail S. Clark, Javier del Campo, Caroline E. Dennison , Katherine R. Eaton, Naomi E. Huntley, Christina A. Kellogg, Mónica Medina, Julie L. Meyer, Erinn M. Muller, Mauricio Rodriguez-Lanetty, Jennifer L. Salerno, William B. Schill, Erin N. Shilling, Julia Marie Stewart and Joshua D. Voss (2023). A meta-analysis of the stony coral tissue loss disease microbiome finds key bacteria in unaffected and lesion tissue in diseased colonies. ISME Journal, 3, 19. https://doi.org/10.1038/s43705-023-00220-0

J. Grace Klinges1,2*, Shalvi H. Patel1 , William C. Duke1 , Erinn M. Muller2,3 & Rebecca L.VegaThurber1 (2023). Microbiomes of a disease – resistant genotype of Acropora cervicornis are resistant to acute, but not chronic, nutrient enrichment. Scientific Reports, 13, 3617. https://doi.org/10.1038/s41598-023-30615-x

Brianna V. Cahill1, 4,*, Kayla L. McCulloch2, Breanna C. DeGroot1, Kim Bassos-Hull3, Matthew J. Ajemian1 (2023). Breaking bags and crunching clams: assessing whitespotted eagle ray interactions with hard clam aquaculture gear. Aquaculture Environment Interactions, Vol. 15 , 59–71. https://doi.org/10.3354/aei00452

Brendan S. Talwar, Mark E. Bond, Sean Williams, Edward J. Brooks, Demian D. Chapman, Lucy A. Howey, Ryan Knotek, Jim Gelsleichter (2023). Reproductive timing and putative mating behavior of the oceanic whitetip shark Carcharhinus longimanus in the eastern Bahamas. Endangered Species Research, 50, 181-194. https://doi.org/10.3354/esr01231

D. Cardenosa, Y. L. Robles, D. A. Ussa, C. M. del Valle, S. Caballero, & D. D. Chapman (2023). Pre-export shark fin processing to conceal CITES-listed species: a case-study from a shark fin seizure in Colombia. Animal Conservation, 26, 781-788. https://doi.org/10.1111/acv.12864

Kiel, P., Formel, N., Jankulak, M., Baker, A., Cunning, R., Gilliam, D., Kenkel, C., Langdon, C., Lirman, D., Lustic, C., Maxwell, K., Moudling, A., Moura, A., Muller, E., Schopmeyer, S., Winters, S., Enochs, I. (2023). Acropora cervicornis Data Coordination Hub, an open access database for evaluating genet performance. Bulletin of marine science of the gulf and carribbean, 99(2), 119-136. https://doi.org/10.5343/bms.2022.0064

Oliver N. Shipley, Philip Matich, Nigel E. Hussey, Annabelle M. L. Brooks, Demian Chapman, Michael G. Frisk, Annie E. Guttridge , Tristan L. Guttridge, Lucy A. Howey, Sami Kattan, Daniel J. Madigan, Owen O’Shea, Nicholas V. Polunin, Michael Power, Matthew J. Smukall, Eric V. C. Schneider, Brendan D. Shea, Brendan S. Talwar, Maggie Winchester, Edward J. Brooks and Austin J. Gallagher (2023). Energetic connectivity of diverse elasmobranch populations- implications for ecological resilience. Proceedings of the Royal Society B, 290, 20230262. https://doi.org/10.1098/rspb.2023.0262

Ackerman, A., K. Yarincik, S. Murphy, I. Cetinić, A. Fundis, A. Miller, E. Shroyer, A. Busse, Q. Covington, A. DeSilva, A. Haupt, L. Johnson, C. Lee, L. Lorenzoni, B. Murphy, J. Ramarui, B. Rosenheim, and D. Steinberg. (2023). Know before you go: A community-derived approach to planning for and preventing sexual harassment at oceanographic field sites. Oceanography, 36(1), 38-48. https://doi.org/10.5670/oceanog.2023.112

Duffield, Debbie; Wells, Randall (2023). Paternity patterns in a long-term resident bottlenose dolphin community. Frontiers in Marine Science, 10, 1076715. https://doi.org/10.3389/fmars.2023.1076715

Courtney N. Klepac, Katherine R. Eaton, Chelsea G. Petrik, Lindsay N. Arick, Emily R. Hall and Erinn M. Muller (2023). Symbiont composition and coral genotype determines massive coral species performance under end-of-century climate scenarios. Frontiers in Marine Science, 10, 164. https://doi.org/10.3389/fmars.2023.1026426

Schwacke, L. H., Thomas, L., Wells, R. S., Rowles, T. K., Bossart, G. D., Townsend Jr, F., Mazzoil, M., Allen, J. B., Balmer, B. C., Barleycorn, A. A., Barratclough, A., Burt, L., De Guise, S., Fauquier, D., Gomez, F. M., Kellar, N. M., Schwacke, J. H., Speakman, T. R., Stolen, E. D., Quigley, B. M., Zolman, E. S., Smith, C. R. (2023). An expert-based system to predict population survival rate from health data. Conservation biology, e14073. https://doi.org/10.1111/cobi.14073

Floriaan Devloo-Delva, Christopher P. Burridge, Peter M. Kyne, Juerg M. Brunnschweiler, Demian D. Chapman, Patricia Charvet, Xiao Chen, Geremy Cliff, Ryan Daly, J. Marcus Drymon, Mario Espinoza, Daniel Fernando, Laura Garcia Barcia, Kerstin Glaus, Blanca I. González-Garza, Michael I. Grant, Rasanthi M. Gunasekera, Sebastian Hernandez, Susumu Hyodo, Rima W. Jabado, Sébastien Jaquemet, Grant Johnson, James T. Ketchum, Hélène Magalon, James R. Marthick, Frederik H. Mollen, Stefano Mona, Gavin J. P. Naylor, John E. G. Nevill, Nicole M. Phillips, Richard D. Pillans, Bautisse D. Postaire, Amy F. Smoothey, Katsunori Tachihara, Bree J. Tillet, Jorge A. Valerio-Vargas, Pierre Feutry (2023). From rivers to ocean basins: The role of ocean barriers and philopatry in the genetic structuring of a cosmopolitan coastal predator. Ecology and Evolution, 13(2), e9837. https://doi.org/10.1002/ece3.9837

Gantt, S.E., Keister, E.F., Manfroy, A.A., Merck, D.E., Fitt, W.K., Muller, E.M. and Kemp, D.W. (2023). Wild and nursery-raised corals: comparative physiology of two framework coral species.. Coral Reefs. https://doi.org/10.1007/s00338-022-02333-9

Klaus Moeltner; Tracy Fanara; Hosein Foroutan; Regina Hanlon; Vince Lovko; Shane Ross ; David Schmale III (2023). Harmful Algal Blooms and Toxic Air: The Economic Value of Improved Forecasts. Marine Resource Economics, 38(1). https://doi.org/10.1086/722598

Longden, EG; Gillespie D; Mann, DA; McHugh, KA; Rycyk, AM; Wells, RS; Tyack, PL (2022). Comparison of the marine soundscape before and during the COVID-19 pandemic in dolphin habitat in Sarasota Bay, FL. Journal of the Acoustical Society of America, 152(6), 3170-3185. https://doi.org/10.1121/10.0015366

Trotter, C; Wright, N; McGough, S; Sharpe, M; Cheney, B; Arso Civil, Monica; Tyson Moore, R; Allen, J; Berggren, P. (2022). Towards Automatic Cetacean Photo-Identification: A Framework for Fine-Grain, Few-Shot Learning in Marine Ecology. IEEE Big Data, 1942-1949. https://arxiv.org/abs/2212.03646

Hanna R. Koch, Briana Matthews, Celia Leto, Cody Engelsma, Erich Bartels (2022). Assisted sexual reproduction of Acropora cervicornis for active restoration on Florida’s Coral Reef. Frontiers in Marine Science, 9, 959520. https://doi.org/10.3389/fmars.2022.959520

Victor Blanco, Cortney Ohs, Nicole Rhody, and Ronald Hans (2022). Candidate Species for Florida Aquaculture: Almaco Jack, Seriola rivoliana. University of Florida, Institute of Food and Agricultural Sciences (UF/IFAS) Extension Data Information Source (EDIS), FA249. https://doi.org/10.32473/edis-FA249-2022

Elder, H., Million, W.C., Bartels, E., Krediet, C.J., Muller, E.M. and Kenkel, C.D. (2022). Long-term maintenance of a heterologous symbiont association in Acropora palmata on natural reefs. ISME Journal, 16(2), 400-411. https://doi.org/10.1038/s41396-022-01349-x

Schwacke, L. H., Marques, T. A., Thomas, L., Booth, C. G., Balmer, B. C., Barratclough, A., Colegrove, K., De Guise, S., Garrison, L. P., Gomez, F. M., Morey, J. S., Mullin, K. D., Quigley, B. M., Rosel, P. E., Rowles, T. K., Takeshita, R., Townsend, F. I., Speakman, T. R., Wells, R. S., …, & Smith, C. R. (2022). Modeling population effects of the Deepwater Horizon oil spill on a long-lived species. Conservation Biology, e13878. https://doi.org/10.1111/cobi.13878